scRNAseq Bootcamp - 2025 - 1

The Bioinformatics Resource Center invites you to the following event as a part of our bioinformatics learning series.

 

Topic:     scRNAseq Bootcamp

Date:      02/11/25 - 02/13/25

Time:      09:30am-4:30 pm,

Location: Weiss 305

These sessions will be great for anyone with experience in R people who need to do scRNAseq analysis. If you haven't attended our Intro to R course, then we recommend reviewing the course material beforehand. 

Participants will learn a full workflow for scRNAseq analysis: basic QC, how to correct for technical issues such as ambient RNA, integrating multiple datasets together, clustering and differential analysis. 

These are in-person training sessions. Sessions will be a mixture of presentations and live coding. Participants are encouraged to code along with the instructor. 

We will limit the number of registrants and there will be a charge of $350 per participant.

 

FAQs

Is this a credited course for Graduate Students?

No. There is a Graduate School course starting March 24th which overlaps with some of the material covered in these sessions (though in less depth). Reach out to the Graduate School if you are interested. 

 

I have registered. What now?

After registration, you will receive a confirmation email. We will follow up closer to the course date with additional details about the room and how to set up your computer before these sessions.

 

I have no programming experience. Is this appropriate for me?

No. Though we will help you get set up, we will focus on advanced topics rather than the basics of coding.

 

When will you cover other topics?

We have many other sessions currently planned. Check our website for a full list of our courses.

Research Assistant     
Postdoc     
Graduate Student     
Staff Scientist     
Head of Laboratory     
Administrator     
Other     

Never done programming     
Have attended classes, but never used it solo     
Have done some basics i.e. reading/writing tables     
Worked through some analysis workflows     
Build and maintain your own analysis workflows     

R     
Python     
Command Line Tools     
Matlab     
Perl     
Java     
C++     
Other     

General data handling and plotting     
scRNAseq     
Bulk RNAseq     
ChIPseq     
ATACseq     
Image analysis     
Other     

Select Session

SCRNASEQ BOOTCAMP
Availability -  Open

Session 1

Date - Tuesday February 11, 2025
Time: 9:30 am - 4:30 pm
Location: 305 WRB
Instructor - Wei Wang, Jenelys Ruiz-Ortiz, Doug Barrows and Matt Paul
Contact - Matt Paul
brc@rockefeller.edu

Availability -  Open

Session 2

Date - Wednesday February 12, 2025
Time: 9:30 am - 4:30 pm
Location: 305 WRB
Instructor - Wei Wang, Jenelys Ruiz-Ortiz, Doug Barrows and Matt Paul
Contact - Matt Paul
brc@rockefeller.edu

Availability -  Open

Session 3

Date - Thursday February 13, 2025
Time: 9:30 am - 4:30 pm
Location: 305 WRB
Instructor - Wei Wang, Jenelys Ruiz-Ortiz, Doug Barrows and Matt Paul
Contact - Matt Paul
brc@rockefeller.edu